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See the how to cite section in the documentation. The development started in late 2008 when Tomaž Curk and Gregor Rot ICount is developed and supported by Tomaž Curk from theīioinformatics Laboratory at the University of Ljubljana,įaculty of Computer and Information Science and in collaboration with You may start with the tutorial or dive into the RNAmap generation showing the positional distribution of cross-linked sites relative to genomic landmarks,.grouping of individual replicate experiments,.clusters of significant cross-linked sites, saved to BED files,.peaks composed of statistically significant cross-linked sites, saved to BED files,.identified protein-RNA cross-linked sites, saved to BED files,.demultiplexed and adapter-trimmed FASTQ files,.
Which provides all the commands needed to process iCLIP data on ICount is a Python module and associated command-line interface (CLI),
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